Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU6Hr1G01567097.9++5679400Partial-Overlap




Transcripts from Gene BART1_0-u42835

TranscriptLength(bp)Description
BART1_0-u42835.00122982298 bp MSTRG.42835.1 MSTRG.42835
BART1_0-u42835.00223292329 bp MSTRG.42835.2 MSTRG.42835
BART1_0-u42835.00323432343 bp MSTRG.42835.3 MSTRG.42835
BART1_0-u42835.00423462346 bp MSTRG.42835.4 MSTRG.42835
BART1_0-u42835.00523392339 bp MSTRG.42835.5 MSTRG.42835
BART1_0-u42835.00625202520 bp MSTRG.42835.6 MSTRG.42835
BART1_0-u42835.00722022202 bp MSTRG.42835.7 MSTRG.42835
BART1_0-u42835.00821262126 bp MSTRG.42835.8 MSTRG.42835
BART1_0-u42835.00920542054 bp MSTRG.42835.9 MSTRG.42835
BART1_0-u42835.01021172117 bp MSTRG.42835.10 MSTRG.42835
BART1_0-u42835.01113511351 bp MSTRG.42835.11 MSTRG.42835



Exon Structure of BART1_0-u42835


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g03690.1 +3 0.0 565 262/307 (85%) protein|beta-amylase, putative, expressed
TAIR PP10 AT5G45300 @ ARAPORT
AT5G45300.2 @ TAIR
+3 5e-172 388 181/289 (63%) Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=687
BRACH PP3 Bradi3g02800.2.p +3 0.0 580 271/309 (88%) pacid=32818287 transcript=Bradi3g02800.2 locus=Bradi3g02800 ID=Bradi3g02800.2.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0009570chloroplast stroma
GO:0102229amylopectin maltohydrolase activity
GO:0005634nucleus
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0000272polysaccharide catabolic process
GO:0016161beta-amylase activity
GO:0016021integral component of membrane
GO:0006355regulation of transcription, DNA-templated
GO:0048831regulation of shoot system development



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons