- Gene BART1_0-u42835
- Gene IDBART1_0-u42835
- Location chr6H: 34891700 - 34897503
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU6Hr1G015670 | 97.9 | + | + | 5679 | 400 | Partial-Overlap |
Transcripts from Gene BART1_0-u42835
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u42835.001 | 2298 | 2298 bp MSTRG.42835.1 MSTRG.42835 |
BART1_0-u42835.002 | 2329 | 2329 bp MSTRG.42835.2 MSTRG.42835 |
BART1_0-u42835.003 | 2343 | 2343 bp MSTRG.42835.3 MSTRG.42835 |
BART1_0-u42835.004 | 2346 | 2346 bp MSTRG.42835.4 MSTRG.42835 |
BART1_0-u42835.005 | 2339 | 2339 bp MSTRG.42835.5 MSTRG.42835 |
BART1_0-u42835.006 | 2520 | 2520 bp MSTRG.42835.6 MSTRG.42835 |
BART1_0-u42835.007 | 2202 | 2202 bp MSTRG.42835.7 MSTRG.42835 |
BART1_0-u42835.008 | 2126 | 2126 bp MSTRG.42835.8 MSTRG.42835 |
BART1_0-u42835.009 | 2054 | 2054 bp MSTRG.42835.9 MSTRG.42835 |
BART1_0-u42835.010 | 2117 | 2117 bp MSTRG.42835.10 MSTRG.42835 |
BART1_0-u42835.011 | 1351 | 1351 bp MSTRG.42835.11 MSTRG.42835 |
Exon Structure of BART1_0-u42835
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g03690.1 | +3 | 0.0 | 565 | 262/307 (85%) | protein|beta-amylase, putative, expressed |
TAIR PP10 | AT5G45300 @ ARAPORT AT5G45300.2 @ TAIR |
+3 | 5e-172 | 388 | 181/289 (63%) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=687 |
BRACH PP3 | Bradi3g02800.2.p | +3 | 0.0 | 580 | 271/309 (88%) | pacid=32818287 transcript=Bradi3g02800.2 locus=Bradi3g02800 ID=Bradi3g02800.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0009570 | chloroplast stroma |
GO:0102229 | amylopectin maltohydrolase activity |
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0003700 | DNA-binding transcription factor activity |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
GO:0016021 | integral component of membrane |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0048831 | regulation of shoot system development |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons