- Gene BART1_0-u42531
- Gene IDBART1_0-u42531
- Location chr6H: 22236557 - 22242157
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU6Hr1G011910 | 66.4 | + | + | 3716 | 5508 | Partial-Overlap |
HORVU6Hr1G011920 | 26.7 | + | + | 1493 | -4108 | Containing |
Transcripts from Gene BART1_0-u42531
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u42531.001 | 3296 | 3296 bp MSTRG.42531.1 MSTRG.42531 |
BART1_0-u42531.002 | 2143 | 2143 bp MSTRG.42531.2 MSTRG.42531 |
BART1_0-u42531.003 | 2416 | 2416 bp MSTRG.42531.3 MSTRG.42531 |
BART1_0-u42531.004 | 2193 | 2193 bp MSTRG.42531.4 MSTRG.42531 |
BART1_0-u42531.005 | 1132 | 1132 bp MSTRG.42531.5 MSTRG.42531 |
BART1_0-u42531.006 | 2286 | 2286 bp MSTRG.42531.6 MSTRG.42531 |
BART1_0-u42531.007 | 1603 | 1603 bp MSTRG.42531.7 MSTRG.42531 |
BART1_0-u42531.008 | 2625 | 2625 bp MSTRG.42531.8 MSTRG.42531 |
BART1_0-u42531.009 | 919 | 919 bp MSTRG.42531.9 MSTRG.42531 |
BART1_0-u42531.010 | 2253 | 2253 bp MSTRG.42531.10 MSTRG.42531 |
Exon Structure of BART1_0-u42531
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g03040.1 | +3 | 5e-120 | 371 | 220/261 (84%) | protein|RNA recognition motif containing protein, expressed |
TAIR PP10 | AT5G52040 @ ARAPORT AT5G52040.2 @ TAIR |
+3 | 1e-83 | 275 | 169/289 (58%) | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357 |
BRACH PP3 | Bradi3g02226.1.p | +3 | 2e-133 | 406 | 241/258 (93%) | pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0031053 | primary miRNA processing |
GO:0035195 | gene silencing by miRNA |
GO:0016607 | nuclear speck |
GO:0005681 | spliceosomal complex |
GO:0042254 | ribosome biogenesis |
GO:0008168 | methyltransferase activity |
GO:0006396 | RNA processing |
GO:0008234 | cysteine-type peptidase activity |
GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
GO:0000398 | mRNA splicing, via spliceosome |
GO:0001510 | RNA methylation |
GO:0003677 | DNA binding |
GO:0003723 | RNA binding |
GO:0005515 | protein binding |
GO:0016071 | mRNA metabolic process |
GO:0016072 | rRNA metabolic process |
GO:0000381 | regulation of alternative mRNA splicing, via spliceosome |
GO:0000160 | phosphorelay signal transduction system |
GO:0006508 | proteolysis |
GO:0010445 | nuclear dicing body |
GO:0032259 | methylation |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons