Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU6Hr1G01191066.4++37165508Partial-Overlap
HORVU6Hr1G01192026.7++1493-4108Containing




Transcripts from Gene BART1_0-u42531

TranscriptLength(bp)Description
BART1_0-u42531.00132963296 bp MSTRG.42531.1 MSTRG.42531
BART1_0-u42531.00221432143 bp MSTRG.42531.2 MSTRG.42531
BART1_0-u42531.00324162416 bp MSTRG.42531.3 MSTRG.42531
BART1_0-u42531.00421932193 bp MSTRG.42531.4 MSTRG.42531
BART1_0-u42531.00511321132 bp MSTRG.42531.5 MSTRG.42531
BART1_0-u42531.00622862286 bp MSTRG.42531.6 MSTRG.42531
BART1_0-u42531.00716031603 bp MSTRG.42531.7 MSTRG.42531
BART1_0-u42531.00826252625 bp MSTRG.42531.8 MSTRG.42531
BART1_0-u42531.009919919 bp MSTRG.42531.9 MSTRG.42531
BART1_0-u42531.01022532253 bp MSTRG.42531.10 MSTRG.42531



Exon Structure of BART1_0-u42531


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os02g03040.1 +3 5e-120 371 220/261 (84%) protein|RNA recognition motif containing protein, expressed
TAIR PP10 AT5G52040 @ ARAPORT
AT5G52040.2 @ TAIR
+3 1e-83 275 169/289 (58%) Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357
BRACH PP3 Bradi3g02226.1.p +3 2e-133 406 241/258 (93%) pacid=32814082 transcript=Bradi3g02226.1 locus=Bradi3g02226 ID=Bradi3g02226.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0031053primary miRNA processing
GO:0035195gene silencing by miRNA
GO:0016607nuclear speck
GO:0005681spliceosomal complex
GO:0042254ribosome biogenesis
GO:0008168methyltransferase activity
GO:0006396RNA processing
GO:0008234cysteine-type peptidase activity
GO:0000179rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0000398mRNA splicing, via spliceosome
GO:0001510RNA methylation
GO:0003677DNA binding
GO:0003723RNA binding
GO:0005515protein binding
GO:0016071mRNA metabolic process
GO:0016072rRNA metabolic process
GO:0000381regulation of alternative mRNA splicing, via spliceosome
GO:0000160phosphorelay signal transduction system
GO:0006508proteolysis
GO:0010445nuclear dicing body
GO:0032259methylation



Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons