Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G081420	88.6	-	-	2858	-367	Containing

Transcripts from Gene BART1_0-u37955

Transcript	Length(bp)	Description
BART1_0-u37955.001	1937	1937 bp MSTRG.37955.1 MSTRG.37955
BART1_0-u37955.002	2000	2000 bp MSTRG.37955.2 MSTRG.37955
BART1_0-u37955.003	1720	1720 bp MSTRG.37955.3 MSTRG.37955
BART1_0-u37955.004	2365	2365 bp MSTRG.37955.4 MSTRG.37955
BART1_0-u37955.005	1529	1529 bp MSTRG.37955.5 MSTRG.37955

Exon Structure of BART1_0-u37955

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os09g36140.1	+2	2e-31	127	63/94 (67%)	protein|RNA recognition motif 2 domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi4g36020.1.p	+2	2e-44	162	79/97 (81%)	pacid=32789987 transcript=Bradi4g36020.1 locus=Bradi4g36020 ID=Bradi4g36020.1.v3.1 annot-version=v3.1

GO Annotation

There is no GO annotation for this gene

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons