Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G038840	68.9	+	+	2746	-1238	Containing

Transcripts from Gene BART1_0-u34851

Transcript	Length(bp)	Description
BART1_0-u34851.001	2999	2999 bp MSTRG.34851.1 MSTRG.34851
BART1_0-u34851.002	2429	2429 bp MSTRG.34851.2 MSTRG.34851
BART1_0-u34851.003	2452	2452 bp MSTRG.34851.3 MSTRG.34851
BART1_0-u34851.004	2096	2096 bp MSTRG.34851.4 MSTRG.34851
BART1_0-u34851.005	2384	2384 bp MSTRG.34851.5 MSTRG.34851

Exon Structure of BART1_0-u34851

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os12g31000.1	+2	0.0	652	358/523 (68%)	protein|pumilio-family RNA binding repeat domain containing protein, expressed
TAIR PP10	AT1G22240 @ ARAPORT AT1G22240.1 @ TAIR	+2	4e-115	364	176/319 (55%)	Symbols: APUM8, PUM8 | pumilio 8 | chr1:7853084-7854963 FORWARD LENGTH=515
BRACH PP3	Bradi4g07100.1.p	+2	0.0	786	410/507 (81%)	pacid=32788499 transcript=Bradi4g07100.1 locus=Bradi4g07100 ID=Bradi4g07100.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
GO:0008104	protein localization
GO:0001304	progressive alteration of chromatin involved in replicative cell aging
GO:0043487	regulation of RNA stability
GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0006417	regulation of translation
GO:0009507	chloroplast
GO:0003723	RNA binding
GO:0046872	metal ion binding
GO:0031936	negative regulation of chromatin silencing
GO:0016021	integral component of membrane
GO:2000113	negative regulation of cellular macromolecule biosynthetic process
GO:0055114	oxidation-reduction process
GO:0032269	negative regulation of cellular protein metabolic process
GO:0034249	negative regulation of cellular amide metabolic process

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons