- Gene BART1_0-u29736
- Gene IDBART1_0-u29736
- Location chr4H: 483705742 - 483712253
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU4Hr1G057650 | 95.8 | + | + | 6235 | -277 | Containing |
| HORVU4Hr1G057660 | 5.5 | + | + | 355 | -6157 | Containing |
Transcripts from Gene BART1_0-u29736
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u29736.001 | 1681 | 1681 bp MSTRG.29736.1 MSTRG.29736 |
| BART1_0-u29736.002 | 1606 | 1606 bp MSTRG.29736.2 MSTRG.29736 |
| BART1_0-u29736.003 | 1428 | 1428 bp MSTRG.29736.3 MSTRG.29736 |
| BART1_0-u29736.004 | 1369 | 1369 bp MSTRG.29736.4 MSTRG.29736 |
| BART1_0-u29736.005 | 1344 | 1344 bp MSTRG.29736.5 MSTRG.29736 |
| BART1_0-u29736.006 | 1293 | 1293 bp MSTRG.29736.6 MSTRG.29736 |
| BART1_0-u29736.007 | 1327 | 1327 bp MSTRG.29736.7 MSTRG.29736 |
| BART1_0-u29736.008 | 1355 | 1355 bp MSTRG.29736.8 MSTRG.29736 |
| BART1_0-u29736.009 | 932 | 932 bp MSTRG.29736.9 MSTRG.29736 |
Exon Structure of BART1_0-u29736
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g27320.1 | +1 | 7e-162 | 465 | 284/335 (85%) | protein|steroid binding protein, putative, expressed |
| TAIR PP10 | AT5G58220 @ ARAPORT AT5G58220.1 @ TAIR |
+1 | 4e-91 | 283 | 167/321 (52%) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324 |
| BRACH PP3 | Bradi1g60700.1.p | +1 | 3e-177 | 504 | 292/333 (88%) | pacid=32804008 transcript=Bradi1g60700.1 locus=Bradi1g60700 ID=Bradi1g60700.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0005777 | peroxisome |
| GO:0019428 | allantoin biosynthetic process |
| GO:0051289 | protein homotetramerization |
| GO:0016829 | lyase activity |
| GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane |
| GO:0005829 | cytosol |
| GO:0009742 | brassinosteroid mediated signaling pathway |
| GO:0033971 | hydroxyisourate hydrolase activity |
| GO:0006144 | purine nucleobase metabolic process |
| GO:0001560 | regulation of cell growth by extracellular stimulus |
| GO:0051997 | 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons