Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G057310	81.9	+	+	2139	-475	Containing

Transcripts from Gene BART1_0-u29730

Transcript	Length(bp)	Description
BART1_0-u29730.001	2322	2322 bp MSTRG.29730.1 MSTRG.29730
BART1_0-u29730.002	2325	2325 bp MSTRG.29730.2 MSTRG.29730

Exon Structure of BART1_0-u29730

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g17610.1	+3	0.0	709	386/446 (87%)	protein|OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
TAIR PP10	AT5G02820 @ ARAPORT AT5G02820.1 @ TAIR	+3	0.0	578	275/363 (76%)	Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, subunit A protein | chr5:642658-644123 FORWARD LENGTH=427
BRACH PP3	Bradi1g65870.1.p	+3	0.0	729	411/442 (93%)	pacid=32803449 transcript=Bradi1g65870.1 locus=Bradi1g65870 ID=Bradi1g65870.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016889	endodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0008094	DNA-dependent ATPase activity
GO:0042802	identical protein binding
GO:0000706	meiotic DNA double-strand break processing
GO:0007131	reciprocal meiotic recombination
GO:0009330	DNA topoisomerase complex (ATP-hydrolyzing)
GO:0000737	DNA catabolic process, endonucleolytic
GO:0061505	DNA topoisomerase II activity
GO:0005694	chromosome
GO:0006265	DNA topological change
GO:0042138	meiotic DNA double-strand break formation
GO:0000287	magnesium ion binding
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0009957	epidermal cell fate specification
GO:0055114	oxidation-reduction process

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons