Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G098530	92.1	+	+	4679	-400	Containing

Transcripts from Gene BART1_0-u24401

Transcript	Length(bp)	Description
BART1_0-u24401.001	2129	2129 bp MSTRG.24401.1 MSTRG.24401
BART1_0-u24401.002	2253	2253 bp MSTRG.24401.2 MSTRG.24401
BART1_0-u24401.003	2244	2244 bp MSTRG.24401.3 MSTRG.24401
BART1_0-u24401.004	2222	2222 bp MSTRG.24401.4 MSTRG.24401
BART1_0-u24401.005	1992	1992 bp MSTRG.24401.5 MSTRG.24401
BART1_0-u24401.006	2422	2422 bp MSTRG.24401.6 MSTRG.24401
BART1_0-u24401.007	2754	2754 bp MSTRG.24401.7 MSTRG.24401
BART1_0-u24401.008	2855	2855 bp MSTRG.24401.8 MSTRG.24401
BART1_0-u24401.009	1550	1550 bp MSTRG.24401.9 MSTRG.24401
BART1_0-u24401.010	1751	1751 bp MSTRG.24401.10 MSTRG.24401
BART1_0-u24401.011	1757	1757 bp MSTRG.24401.11 MSTRG.24401
BART1_0-u24401.012	1809	1809 bp MSTRG.24401.12 MSTRG.24401
BART1_0-u24401.013	2033	2033 bp MSTRG.24401.13 MSTRG.24401
BART1_0-u24401.014	1504	1504 bp MSTRG.24401.14 MSTRG.24401

Exon Structure of BART1_0-u24401

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g70920.2	+3	2e-132	400	207/301 (69%)	protein|cullin-1, putative, expressed
TAIR PP10	AT4G02570 @ ARAPORT AT4G02570.4 @ TAIR	+3	1e-34	142	107/320 (33%)	Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738
BRACH PP3	Bradi2g60057.3.p	+3	2e-156	463	236/304 (78%)	pacid=32775524 transcript=Bradi2g60057.3 locus=Bradi2g60057 ID=Bradi2g60057.3.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0031625	ubiquitin protein ligase binding
GO:0031461	cullin-RING ubiquitin ligase complex
GO:0006511	ubiquitin-dependent protein catabolic process

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons