Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G013720	97.8	+	+	4377	-99	Partial-Overlap

Transcripts from Gene BART1_0-u18088

Transcript	Length(bp)	Description
BART1_0-u18088.001	1781	1781 bp MSTRG.18088.1 MSTRG.18088
BART1_0-u18088.002	1789	1789 bp MSTRG.18088.2 MSTRG.18088

Exon Structure of BART1_0-u18088

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os01g05680.1	+2	2e-115	343	158/189 (84%)	protein|geranylgeranyl transferase type-1 subunit beta, putative, expressed
TAIR PP10	AT2G39550 @ ARAPORT AT2G39550.1 @ TAIR	+2	3e-112	257	123/189 (65%)	Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375
BRACH PP3	Bradi2g03310.1.p	+2	8e-157	350	164/189 (87%)	pacid=32775578 transcript=Bradi2g03310.1 locus=Bradi2g03310 ID=Bradi2g03310.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0004661	protein geranylgeranyltransferase activity
GO:0006633	fatty acid biosynthetic process
GO:0009414	response to water deprivation
GO:0009733	response to auxin
GO:0009788	negative regulation of abscisic acid-activated signaling pathway
GO:0005789	endoplasmic reticulum membrane
GO:0005953	CAAX-protein geranylgeranyltransferase complex
GO:0009737	response to abscisic acid
GO:0046872	metal ion binding
GO:0016021	integral component of membrane
GO:0102343	3-hydroxy-arachidoyl-CoA dehydratase activity
GO:0102158	very-long-chain 3-hydroxyacyl-CoA dehydratase activity
GO:0102345	3-hydroxy-lignoceroyl-CoA dehydratase activity
GO:0018344	protein geranylgeranylation
GO:0102344	3-hydroxy-behenoyl-CoA dehydratase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons