- Gene BART1_0-u18088
- Gene IDBART1_0-u18088
- Location chr3H: 30432927 - 30437404
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU3Hr1G013720 | 97.8 | + | + | 4377 | -99 | Partial-Overlap |
Transcripts from Gene BART1_0-u18088
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u18088.001 | 1781 | 1781 bp MSTRG.18088.1 MSTRG.18088 |
BART1_0-u18088.002 | 1789 | 1789 bp MSTRG.18088.2 MSTRG.18088 |
Exon Structure of BART1_0-u18088
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g05680.1 | +2 | 2e-115 | 343 | 158/189 (84%) | protein|geranylgeranyl transferase type-1 subunit beta, putative, expressed |
TAIR PP10 | AT2G39550 @ ARAPORT AT2G39550.1 @ TAIR |
+2 | 3e-112 | 257 | 123/189 (65%) | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375 |
BRACH PP3 | Bradi2g03310.1.p | +2 | 8e-157 | 350 | 164/189 (87%) | pacid=32775578 transcript=Bradi2g03310.1 locus=Bradi2g03310 ID=Bradi2g03310.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0004661 | protein geranylgeranyltransferase activity |
GO:0006633 | fatty acid biosynthetic process |
GO:0009414 | response to water deprivation |
GO:0009733 | response to auxin |
GO:0009788 | negative regulation of abscisic acid-activated signaling pathway |
GO:0005789 | endoplasmic reticulum membrane |
GO:0005953 | CAAX-protein geranylgeranyltransferase complex |
GO:0009737 | response to abscisic acid |
GO:0046872 | metal ion binding |
GO:0016021 | integral component of membrane |
GO:0102343 | 3-hydroxy-arachidoyl-CoA dehydratase activity |
GO:0102158 | very-long-chain 3-hydroxyacyl-CoA dehydratase activity |
GO:0102345 | 3-hydroxy-lignoceroyl-CoA dehydratase activity |
GO:0018344 | protein geranylgeranylation |
GO:0102344 | 3-hydroxy-behenoyl-CoA dehydratase activity |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons