- Gene BART1_0-u12547
- Gene IDBART1_0-u12547
- Location chr2H: 554962301 - 554970295
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU2Hr1G076830 | 95.9 | - | - | 7665 | -330 | Containing |
Transcripts from Gene BART1_0-u12547
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u12547.001 | 3120 | 3120 bp MSTRG.12547.1 MSTRG.12547 |
| BART1_0-u12547.002 | 3046 | 3046 bp MSTRG.12547.2 MSTRG.12547 |
| BART1_0-u12547.003 | 3043 | 3043 bp MSTRG.12547.3 MSTRG.12547 |
| BART1_0-u12547.004 | 3070 | 3070 bp MSTRG.12547.4 MSTRG.12547 |
| BART1_0-u12547.005 | 3069 | 3069 bp MSTRG.12547.5 MSTRG.12547 |
| BART1_0-u12547.006 | 3027 | 3027 bp MSTRG.12547.6 MSTRG.12547 |
| BART1_0-u12547.007 | 3106 | 3106 bp MSTRG.12547.7 MSTRG.12547 |
| BART1_0-u12547.008 | 2879 | 2879 bp MSTRG.12547.8 MSTRG.12547 |
| BART1_0-u12547.009 | 4101 | 4101 bp MSTRG.12547.9 MSTRG.12547 |
| BART1_0-u12547.010 | 2850 | 2850 bp MSTRG.12547.10 MSTRG.12547 |
| BART1_0-u12547.011 | 2839 | 2839 bp MSTRG.12547.11 MSTRG.12547 |
| BART1_0-u12547.012 | 2480 | 2480 bp MSTRG.12547.12 MSTRG.12547 |
| BART1_0-u12547.013 | 2716 | 2716 bp MSTRG.12547.13 MSTRG.12547 |
| BART1_0-u12547.014 | 2861 | 2861 bp MSTRG.12547.14 MSTRG.12547 |
| BART1_0-u12547.015 | 2657 | 2657 bp MSTRG.12547.15 MSTRG.12547 |
| BART1_0-u12547.016 | 2660 | 2660 bp MSTRG.12547.16 MSTRG.12547 |
| BART1_0-u12547.017 | 2583 | 2583 bp MSTRG.12547.17 MSTRG.12547 |
| BART1_0-u12547.018 | 2660 | 2660 bp MSTRG.12547.18 MSTRG.12547 |
| BART1_0-u12547.019 | 2464 | 2464 bp MSTRG.12547.19 MSTRG.12547 |
| BART1_0-u12547.020 | 2543 | 2543 bp MSTRG.12547.20 MSTRG.12547 |
| BART1_0-u12547.021 | 2388 | 2388 bp MSTRG.12547.21 MSTRG.12547 |
| BART1_0-u12547.022 | 1983 | 1983 bp MSTRG.12547.22 MSTRG.12547 |
Exon Structure of BART1_0-u12547
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g35920.2 | +1 | 6e-179 | 541 | 318/413 (77%) | protein|nonsense-mediated decay UPF3, putative, expressed |
| TAIR PP10 | AT1G33980 @ ARAPORT AT1G33980.1 @ TAIR |
+1 | 7e-62 | 220 | 156/372 (42%) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482 |
| BRACH PP3 | Bradi5g10820.2.p | +1 | 0.0 | 582 | 336/412 (82%) | pacid=32810360 transcript=Bradi5g10820.2 locus=Bradi5g10820 ID=Bradi5g10820.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0003676 | nucleic acid binding |
| GO:0045727 | positive regulation of translation |
| GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
| GO:0005730 | nucleolus |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons