- Gene BART1_0-u05013
- Gene IDBART1_0-u05013
- Location chr1H: 500968335 - 500972545
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
None | - | - | - | - | - | Undefined |
Transcripts from Gene BART1_0-u05013
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u05013.001 | 2514 | 2514 bp MSTRG.5013.1 MSTRG.5013 |
BART1_0-u05013.002 | 2437 | 2437 bp MSTRG.5013.2 MSTRG.5013 |
BART1_0-u05013.003 | 1763 | 1763 bp MSTRG.5013.3 MSTRG.5013 |
BART1_0-u05013.004 | 1611 | 1611 bp MSTRG.5013.4 MSTRG.5013 |
Exon Structure of BART1_0-u05013
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g37900.1 | +1 | 7e-86 | 274 | 159/217 (73%) | protein|zinc finger, C3HC4 type domain containing protein, expressed |
TAIR PP10 | AT5G05830 @ ARAPORT AT5G05830.1 @ TAIR |
+1 | 8e-44 | 157 | 89/159 (56%) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204 |
BRACH PP3 | Bradi2g23610.2.p | +1 | 7e-92 | 290 | 177/241 (73%) | pacid=32776793 transcript=Bradi2g23610.2 locus=Bradi2g23610 ID=Bradi2g23610.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0005634 | nucleus |
GO:0003677 | DNA binding |
GO:0008270 | zinc ion binding |
GO:0003735 | structural constituent of ribosome |
GO:0016021 | integral component of membrane |
GO:0005840 | ribosome |
GO:0016874 | ligase activity |
GO:0006412 | translation |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons