Information & Computational Sciences

New in Tablet 1.17.08.17

By on 17/08/2017 in News
New in Tablet 1.17.08.17

Tablet has just been updated to version 1.17.08.17. NEW: Updated the included Java runtime to 1.8.0_144. CHG: Renamed Show Cigar-I to Show Cigar in the overlays band of the ribbon. CHG: Tablet now doesn’t attempt to render Cigar overlays when the width of a base is less than 1. BUG: Cigar feature creation code can […]

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New in Flapjack 1.16.10.31

By on 31/10/2016 in News
New in Flapjack 1.16.10.31

Flapjack has just been updated to version 1.16.10.31. NEW: Implemented a new analysis method for calculating marker assisted back crossing (MABC) statistics. NEW: Implemented MABC stats for recurrent parent percentage and linkage drag. NEW: Added a initial dialog for MABC to enable selection of parent lines and MABC parameters. NEW: MABC statistics are displayed in […]

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New in Flapjack 1.16.03.04

By on 04/03/2016 in News
New in Flapjack 1.16.03.04

Flapjack has just been updated to version 1.16.03.04. NEW: (Experimental) Updated much of Flapjack’s UI to utilize 4K displays (probably Windows only for now). NEW: Added options to the Preferences dialog to control UI scaling. NEW: A trait’s categorical or numerical status is now reflected in its column header (and tooltip). NEW: Tooltip headers are […]

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Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

By on 13/11/2015 in News
Paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Congratulations to Antonio Ribeiro on the publication of his new BMC Bioinformatics paper: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome Abstract Background Single Nucleotide Polymorphisms (SNPs) are widely used molecular markers, and their use has increased massively since the inception of Next Generation Sequencing […]

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Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

By on 13/11/2015 in News
Book Chapter: Tablet: Visualizing Next-Generation Sequence Assemblies and Mappings

The Tablet team have contributed a chapter to Plant Bioinformatics (2nd Edition): Abstract: This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly important to have […]

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New in Flapjack 1.15.08.31

By on 31/08/2015 in News
New in Flapjack 1.15.08.31

Flapjack has just been updated to version 1.15.08.31. NEW: Updated all the installers to include the latest version of Java. NEW: The traits table will now show the heatmap colours behind each table cell. NEW: Flapjack can now load HDF5 files that are of a specific Flapjack defined format (experimental). NEW: Importing of large genotype […]

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New in Tablet 1.15.08.28

By on 28/08/2015 in News
New in Tablet 1.15.08.28

Tablet has just been updated to version 1.15.08.28. NEW: The read-shadower now highlights all read pairs in addition to reads under the mouse. NEW: Added SHIFT+mouse wheel support, that scrolls the canvas horizontally. NEW: Updated the installers for better Windows 10 and OS X compatibility. NEW: Updated the Java runtime included in the installers to […]

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New in Strudel 1.15.08.25

By on 25/08/2015 in News
New in Strudel 1.15.08.25

Strudel has just been updated to version 1.15.05.25. NEW: Updated the installers to include the latest versions of the Java Runtime (1.8.0_60). NEW: Updated the installers to include compatibility with the latest versions of OS X. CHG: Removed the SCRI branding from the installers and replaced it with JHI branding.

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New in Flapjack 1.15.04.27

By on 27/04/2015 in News
New in Flapjack 1.15.04.27

Flapjack has just been updated to version 1.15.04.27. BUG: Fixed an issue with importing SSR style data where the number of possible allele states can get very high.

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New in Flapjack 1.15.03.02

By on 02/03/2015 in News
New in Flapjack 1.15.03.02

Flapjack has just been updated to version 1.15.03.02. CHG: Importing of very large genotype files is now significantly faster. BUG: Fixed some NPE/HTTP 500 issues with the remote analysis services when using OS X or Linux clients.

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