Data Item | Value |
---|---|
Locus Name | JHI-Hv50k-2016-64 |
Platform | Barley 50K Platform |
Genome Build Version | 2016 |
Position | 1H:48518 |
Source | JHI_ExCapSeq |
Source Version | 0 |
Final Score | 0.996 |
Failure Codes | |
Assay Design ID | 2341823531 |
Illumina ID | JHI-Hv50k-2016-64-0_T_U_2341823531 |
Normalization Bin | C |
Bead Types Assay | 1 |
Design Date | 03/03/2016 |
Assay Type | InfiniumII |
Sequence Orientation UNKNOWN
CAGGGACTCCGTAAATATTACCAGGGAGGATAGGTTTTCGCACTACCGCCCATTGGAGGA[A/G]CATGCCCCCTCCGCCGCAAGGAATGGTCAGTATATATATATTTARCATTTCACTTTGTTG
DOWNSTREAM(MODIFIER||2325|||HORVU1Hr1G000030|Hv_IBSC_PGSB_r1||HORVU1Hr1G000030.1||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||2351|||HORVU1Hr1G000030|Hv_IBSC_PGSB_r1||HORVU1Hr1G000030.2||1),DOWNSTREAM(MODIFIER||2351|||HORVU1Hr1G000030|Hv_IBSC_PGSB_r1||HORVU1Hr1G000030.3||1),DOWNSTREAM(MODIFIER||2362|||HORVU1Hr1G000030|Hv_IBSC_PGSB_r1||HORVU1Hr1G000030.4||1),DOWNSTREAM(MODIFIER||276|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.10||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||3208|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.3||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||3469|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.1||1),DOWNSTREAM(MODIFIER||3701|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.2||1),DOWNSTREAM(MODIFIER||4249|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.8||1),DOWNSTREAM(MODIFIER||4258|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.7||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||4267|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.5||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||4267|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.6||1|WARNING_TRANSCRIPT_NO_START_CODON),DOWNSTREAM(MODIFIER||4310|||HORVU1Hr1G000010|Hv_IBSC_PGSB_r1||HORVU1Hr1G000010.4||1|WARNING_TRANSCRIPT_NO_START_CODON),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E250||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.1|5|1),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E250||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.2|5|1),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E250||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.3|5|1),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E250||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.4|5|1),UPSTREAM(MODIFIER||569|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.11||1|WARNING_TRANSCRIPT_NO_START_CODON),UTR_5_PRIME(MODIFIER||720|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.5|4|1),UTR_5_PRIME(MODIFIER||720|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.6|4|1),UTR_5_PRIME(MODIFIER||720|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.7|4|1),UTR_5_PRIME(MODIFIER||720|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.8|4|1),UTR_5_PRIME(MODIFIER||720|||HORVU1Hr1G000020|Hv_IBSC_PGSB_r1||HORVU1Hr1G000020.9|4|1)
© 2017 The James Hutton Institute Information and Computational Sciences Group / Cell and Molecular Sciences Group.
Paul Shaw, Micha Bayer, Pete Hedley, Joanne Russell, Luke Ramsay, Bill Thomas, Malcolm Macaulay, Paulo Flores and Robbie Waugh.
For further information please contact us barleysnpchip@hutton.ac.uk